Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs1466684 chr3:151046308 G/A 0.00022 119 21.57 50.13 38.23 KM Plot
THYM rs146700355 chr11:109458940 GT/G 3.19E-6 118 42.9 31.88 25.83 KM Plot
THYM rs1467979 chr17:78060743 A/G 0.000115 119 42.3 51.7 35 KM Plot
THYM rs146819449 chr15:71816228 T/TTC 1.51E-6 116 39.75 47.63 12.52 KM Plot
THYM rs146837330 chr19:43334709 T/C 0.000134 118 44.38 26 28.43 KM Plot
THYM rs147007376 chr11:125574385 C/G 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs147156025 chr4:70074730 C/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs147211110 chr10:1537964 TATC/T 0.000185 117 38.33 42.9 25.83 KM Plot
THYM rs147335493 chr6:3267095 C/CTTTA 0 118 4.13 44.3 38.33 KM Plot
THYM rs147343484 chr4:70047202 T/G 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs1473599 chr1:227357055 T/C 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs147400137 chr4:70093956 A/T 0 116 42.82 35 6 KM Plot
THYM rs147418628 chr6:117156408 GTTTA/G 6.6E-5 116 38.83 49.5 19.03 KM Plot
THYM rs147486601 chr5:180125646 AAAAG/A 0 118 46.27 30.27 4.13 KM Plot
THYM rs147537969 chr8:39933207 T/C 0.000101 118 38.83 54.18 28.43 KM Plot